PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0147s0210.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 856aa    MW: 95785.9 Da    PI: 6.5395
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0147s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23129230199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  SapurV1A.0147s0210.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 213
                             99*****************************86555544..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  SapurV1A.0147s0210.1.p 214 LFI--WNEKNQLLLGIRRA 230
                             ***..8899999****997 PP

2Auxin_resp90.13.9e-302963621883
              Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             ras+seFv++++k++ka+  +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SapurV1A.0147s0210.1.p 296 RASPSEFVIPLSKYVKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 362
                             89***************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-49113258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-21128229No hitNo description
PfamPF023622.1E-21129230IPR003340B3 DNA binding domain
SMARTSM010191.3E-23129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308129231IPR003340B3 DNA binding domain
PfamPF065075.0E-25295362IPR010525Auxin response factor
SuperFamilySSF542772.5E-7740820No hitNo description
PfamPF023092.8E-8743831IPR033389AUX/IAA domain
PROSITE profilePS5174524.683746830IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MKLSTSGLGG QQAGQEGEKK CLNSELWHAC AGPLVSLPTA GSRVVYFPQG HSEQVAATTN  60
KEIDAHIPNY PSLPPQLICQ LHNVTMHADV ETDEVYSQMT LQPLTPQEQK ETFLPMDLGM  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHDVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA TRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRWQTCLQVF FNSGFRFSSD MYSFCRASPS  300
EFVIPLSKYV KAVFHTRISV GMRFRMLFET EESSVRRYMG TITGISDLDP VRWPNSHWRS  360
VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSLFPLRLK RPWHPGSSSL LDSRDEASNG  420
LMWLRSGSGE PGLPSLNFQA NMLPWMQQRL DPTMLGNDHN QRYQAMLAAG MQNLGIGDPL  480
RQQFMQLQQP FQYLQQSSSH NQLLQLQQQQ QQQQAMPQSI PHNILQAQNQ ISTDSLPRHL  540
LQQQLNNQPD DQSHQHQHIY HGGLQIQTDQ LHRQQSNLPS PSFSKTEYVD SSSKFSATNA  600
PMQNMLGSLC SEGSVNLLDF SRAGQSTLTE QLPQQSWVPK YAHQEVNAFA NSISLPRTYP  660
EKDPSMEAEN CSSDAHNPTL FGVNIDSSGL LLPTTVPRYS TSSIDADVSS MPLGDSGFQN  720
SLYGCVQDSS ELLSNAGQMD PPTPSRTFVK VYKSGSVGRS LDISRFSSYH ELREELAQMF  780
GIEGKLENPH RSGWQLVFVD RENDVLLLGD DPWELFVNNV WYIKILSPED VLKMGEQGVE  840
PSAPNAVQRM SGGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1541538343388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479150.0EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305917.20.0hypothetical protein POPTR_0004s07640g
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLB9H3I20.0B9H3I2_POPTR; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8